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Is he in a crate? He will get better in a couple days. I had a pup that would cry at night and I would lay in front of the crate after I put her in with my fingers through the door petting her. Once she crashed out, I would sneak back to my bed and sleep for a bit until it was time to get up for the pee break.
At 6 1/2 weeks old, maybe he still needs his mommy? I don't know a lot about puppies, but that seems awful young to be weaned.
I have never had one come home that young which may have something to do with it None the less my new girl came home on the 20th at a little over 7 weeks and has been doing well at night. I had to get up a few times the first couple of nights to let her pee. Be sure to limit water/food intake several hours prior to bedtime and wear her out!!!! I do have her in a create and did exactly what vandeman17 said and it really helped. She is not in love with the create but tolerates it. I try to put her in when she is already half asleep. It has been 14 years since I last did it but I do know it gets easier. Potty training and constantly having to watch her have me pretty worn out too...but just think how great it will be to have our pups in the field with us this time next year Hang in there...I think new puppy parents should have some type of support group on this site...we shall survive.