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i'm lazy, i'll usually slice out the section with the pin bones. if you're careful, you'll only waste about an 1/8" thick strip of meat.
I'll tell you what works best for smoked fish, wastes zero flesh, and is very quick and easy as well. After smoking, you'll notice that the pin bones stick out slightly. Take the edge of your sharp fillet knife, lay it parallel to the flesh and let it catch on the edge of the end of the bones sticking out and simply lift the blade and several bones come out at a time very easily. Work your way down from the beginning to the end of the pin bones. Easily takes less than 10 seconds per fillet. Once you try it you should quickly learn the right angle of approach.
If you plan on freezing the fish, pull them after you thaw them out. they come out way easier